Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_5214990_5215382_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5214990 - 5215382

Intron Length:

393

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTTAGTTCT

5'SS Class:

major

3'SS Sequence:

AAAACTCTTCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATGTAAA

U12 Branch Point Sequence:

TGCTTTTGAGCT

Flanking Amino Acid:

PDRQEEISRLVRSANYDADP

Intron Amino Acid Position:

584

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.1

0.64

1.1

75.3

34.9

Major BPS

66.4

0.41

1.1

67.7

36.5

Major PPT

62.5

0.28

42.6

Minor 5ss

39.3

-1.2

2.7

49.6

40.4

Minor BPS

50.4

0.09

1.7

68.88

42.3

Associated Gene:

Gene:

AGO3

Ensembl Gene ID:

ENSAPLG00000009642

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010139

5207467 - 5234945

27479