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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_5215503_5215800_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5215503 - 5215800
Intron Length:
298

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAATGAAT
5'SS Class:
major
3'SS Sequence:
ATTTTTCTTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TTTTTCTTCAAG
Flanking Amino Acid:
EQKHTYLPLEVCNIVAGQRC
Intron Amino Acid Position:
544

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.1
74.3
35.7
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
77.9
0.63
1
76.4
37.4
Minor 5ss
35.7
-1.6
3.3
48.9
41.4
Minor BPS
60.5
0.18
2
72.05
40.8

Associated Gene:

Gene:
AGO3
Ensembl Gene ID:
ENSAPLG00000009642
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010139
5207467 - 5234945
27479