Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_5215949_5216088_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5215949 - 5216088

Intron Length:

140

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAC|GTAAGATGC

5'SS Class:

major

3'SS Sequence:

TATATTTCTTCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GTTTGAT

U12 Branch Point Sequence:

GTTTGATTAAAA

Flanking Amino Acid:

NVTRRPASHQTFPLQLENGQ

Intron Amino Acid Position:

494

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.3

0.55

1.3

66.9

Major BPS

78.6

0.71

1.2

71.4

45.1

Major PPT

84.1

0.77

0.8

81.7

35.6

Minor 5ss

39.7

-1.2

3.1

50.1

39.9

Minor BPS

0.09

2.1

70.99

40.5

Associated Gene:

Gene:

AGO3

Ensembl Gene ID:

ENSAPLG00000009642

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010139

5207467 - 5234945

27479