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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_5216177_5218369_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5216177 - 5218369
Intron Length:
2193

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TATTTCTGTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
TTTTTTGTATTT
Flanking Amino Acid:
HRVKFTKEIKGLKVEVTHCG
Intron Amino Acid Position:
465

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
0.9
74.1
38.4
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
77.6
0.62
0.9
73.9
36.4
Minor 5ss
29.2
-2.4
2.5
25
36.7
Minor BPS
50.7
0.1
2.2
78.46
39

Associated Gene:

Gene:
AGO3
Ensembl Gene ID:
ENSAPLG00000009642
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010139
5207467 - 5234945
27479