About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_5218505_5220894_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5218505 - 5220894
Intron Length:
2390

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTTGG
5'SS Class:
strong_major
3'SS Sequence:
CTATTCCTTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
CCTTTTTTACAC
Flanking Amino Acid:
AMWKMMLNIDVSATAFYKAQ
Intron Amino Acid Position:
420

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
67.5
40.3
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
79.8
0.67
0.8
77.9
30.6
Minor 5ss
34.3
-1.8
2.8
37.3
42.5
Minor BPS
49.3
-0
1.7
57.98
41.7

Associated Gene:

Gene:
AGO3
Ensembl Gene ID:
ENSAPLG00000009642
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010139
5207467 - 5234945
27479