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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_5223401_5227739_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5223401 - 5227739
Intron Length:
4339

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAGG
5'SS Class:
strong_major
3'SS Sequence:
TCAACTTTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TAAATATCAACT
Flanking Amino Acid:
KPDKCPRRVNREVVDSMVQH
Intron Amino Acid Position:
264

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.8
75.5
40.6
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
73.7
0.53
0.9
65.6
40.6
Minor 5ss
32.9
-2
2.9
40.4
45.3
Minor BPS
49.1
0.01
1.8
68.66
41.2

Associated Gene:

Gene:
AGO3
Ensembl Gene ID:
ENSAPLG00000009642
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010139
5207467 - 5234945
27479