About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_5241824_5242236_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5241824 - 5242236
Intron Length:
413

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAGGC
5'SS Class:
strong_major
3'SS Sequence:
CTTGCGCTTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TATTAAATAATT
Flanking Amino Acid:
RYHLVDKEHDSGEGSHISGQ
Intron Amino Acid Position:
822

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
0.9
69.4
35.7
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
77.5
0.62
0.9
73.1
37.3
Minor 5ss
25.3
-2.8
3.2
32.7
42.3
Minor BPS
50.9
0.11
2
76.97
38.8

Associated Gene:

Gene:
AGO1
Ensembl Gene ID:
ENSAPLG00000010440
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010926
5241340 - 5262468
21129