Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_5247521_5247657_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5247521 - 5247657

Intron Length:

137

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTGCGTCTG

5'SS Class:

major

3'SS Sequence:

CCTCTGCCTGCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTCAT

U12 Branch Point Sequence:

TGCCTGTTCACG

Flanking Amino Acid:

VILPGKTPVYAEVKRVGDTL

Intron Amino Acid Position:

528

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.5

0.51

1.1

60.2

Major BPS

79.7

0.74

79.6

35.6

Major PPT

75.9

0.58

0.8

68.9

31.6

Minor 5ss

31.8

-2.1

3.2

41.3

45.1

Minor BPS

42.2

-0.7

2.4

48.56

45.1

Associated Gene:

Gene:

AGO1

Ensembl Gene ID:

ENSAPLG00000010440

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010926

5241340 - 5262468

21129