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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_5247843_5249029_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5247843 - 5249029
Intron Length:
1187

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
TCTCCTCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GGCTGAC
U12 Branch Point Sequence:
AGGGGCTGACTT
Flanking Amino Acid:
PQKQCREEVLKNFTDQLRKI
Intron Amino Acid Position:
466

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
77.7
32
Major BPS
49.4
-0
1.3
42.8
41.8
Major PPT
82.8
0.74
0.7
77.1
24.8
Minor 5ss
33.3
-1.9
3.2
39.8
40.3
Minor BPS
40
-0.6
2
51.35
43.4

Associated Gene:

Gene:
AGO1
Ensembl Gene ID:
ENSAPLG00000010440
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010926
5241340 - 5262468
21129