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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_5250858_5251144_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5250858 - 5251144
Intron Length:
287

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
CCCCTGCGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
CGTTCCTAACAC
Flanking Amino Acid:
EQKHTYLPLEVCNIVAGQRC
Intron Amino Acid Position:
341

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
78.4
29.1
Major BPS
72
0.55
1
71.8
31.4
Major PPT
66.7
0.38
1
60.2
35.4
Minor 5ss
28.5
-2.5
3
35.5
41.2
Minor BPS
47.7
-0.1
2.1
60
45

Associated Gene:

Gene:
AGO1
Ensembl Gene ID:
ENSAPLG00000010440
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010926
5241340 - 5262468
21129