Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_5252569_5252865_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5252569 - 5252865

Intron Length:

297

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGAGCCC

5'SS Class:

major

3'SS Sequence:

TGTCTCGCATCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CATTTAC

U12 Branch Point Sequence:

TTACCAGTGATT

Flanking Amino Acid:

QRVRFTKEIKGLKVEVTHCG

Intron Amino Acid Position:

262

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

68.2

0.43

1.1

57.2

38.5

Major BPS

66.4

0.41

37.6

Major PPT

69.1

0.43

67.1

39.2

Minor 5ss

-2.3

3.5

42.1

44.9

Minor BPS

46.6

-0.1

2.2

70.57

40.4

Associated Gene:

Gene:

AGO1

Ensembl Gene ID:

ENSAPLG00000010440

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010926

5241340 - 5262468

21129