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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_5253421_5253722_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5253421 - 5253722
Intron Length:
302

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACCTGCA
5'SS Class:
major
3'SS Sequence:
CCTCGCTTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTGAC
U12 Branch Point Sequence:
GTTGTCTGACGT
Flanking Amino Acid:
DVAMRHLASMRYTPVGRSFF
Intron Amino Acid Position:
171

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1.2
66.1
39.9
Major BPS
63.7
0.34
1.2
57
41.8
Major PPT
78.8
0.65
0.8
72
32.5
Minor 5ss
37.4
-1.4
3.3
50.7
45.6
Minor BPS
45
-0.3
2
64.64
45.8

Associated Gene:

Gene:
AGO1
Ensembl Gene ID:
ENSAPLG00000010440
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010926
5241340 - 5262468
21129