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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_5254188_5255135_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5254188 - 5255135
Intron Length:
948

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGCAA
5'SS Class:
strong_major
3'SS Sequence:
CTTGTCTGTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCTT
U12 Branch Point Sequence:
TCTTTCTTGCCT
Flanking Amino Acid:
KPDKCPRRVNREVVEYMVQH
Intron Amino Acid Position:
70

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.92
0.9
74.9
37
Major BPS
34.7
-0.9
4.2
75
39.9
Major PPT
73.7
0.53
0.9
69.4
36.8
Minor 5ss
30.1
-2.3
3.2
37.9
46.9
Minor BPS
48.6
-0
3.5
82.19
39.8

Associated Gene:

Gene:
AGO1
Ensembl Gene ID:
ENSAPLG00000010440
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010926
5241340 - 5262468
21129