Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_526309_526709_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

526309 - 526709

Intron Length:

401

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAAGTAGT

5'SS Class:

strong_major

3'SS Sequence:

CTTGCCTTTACAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TACTGAA

U12 Branch Point Sequence:

CTTGCCTTTACA

Flanking Amino Acid:

FSDDDEIINPEDVDPSVGRF

Intron Amino Acid Position:

215

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.4

0.93

0.8

83.5

Major BPS

74.4

0.61

0.9

63.6

35.5

Major PPT

82.6

0.73

0.8

75.9

32.7

Minor 5ss

37.6

-1.4

2.8

48.3

42.5

Minor BPS

65.8

0.49

1.8

75.18

42.3

Associated Gene:

Gene:

PPP1R8

Ensembl Gene ID:

ENSAPLG00000001009

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040771

525291 - 552803

27513

ENSAPLT00000001013

525291 - 547574

22284