Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_5269247_5269346_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5269247 - 5269346

Intron Length:

100

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGGAAC

5'SS Class:

strong_major

3'SS Sequence:

TGCCTTTTTACAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGTTCAA

U12 Branch Point Sequence:

TGCCTTTTTACA

Flanking Amino Acid:

RYHLVDKDHDSAEGSHVSGQ

Intron Amino Acid Position:

826

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.1

0.97

0.8

82.1

Major BPS

75.6

0.64

1.1

77.7

37.1

Major PPT

84.6

0.78

0.8

79.1

32.9

Minor 5ss

32.6

-2

3.1

42.1

Minor BPS

50.7

0.01

1.6

60.66

39.1

Associated Gene:

Gene:

AGO4

Ensembl Gene ID:

ENSAPLG00000010882

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011325

5269138 - 5280979

11842