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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_5269876_5270687_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5269876 - 5270687
Intron Length:
812

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AGG|GCAAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
CTTTCCACATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TAATAATAAACT
Flanking Amino Acid:
RLFCADKTERVGKSGNVPAG
Intron Amino Acid Position:
726

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
1.1
80.7
36.9
Major BPS
80
0.75
1
78.6
31
Major PPT
73.5
0.53
0.9
72
32.5
Minor 5ss
25.3
-2.8
3.6
28.4
36
Minor BPS
49.4
0.03
2.1
72.79
43.1

Associated Gene:

Gene:
AGO4
Ensembl Gene ID:
ENSAPLG00000010882
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011325
5269138 - 5280979
11842