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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_5274202_5274281_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5274202 - 5274281
Intron Length:
80

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAATC
5'SS Class:
strong_major
3'SS Sequence:
TGTTCCTGTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
CACTTCTCACTG
Flanking Amino Acid:
EQKHTYLPLEVCNIVAGQRC
Intron Amino Acid Position:
333

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.6
1.03
0.7
88
25.3
Major BPS
85
0.87
0.8
85.6
23
Major PPT
74.2
0.54
0.9
69.9
36.5
Minor 5ss
38
-1.3
3.1
51.9
44.9
Minor BPS
44.3
-0.5
1.8
43.51
42.9

Associated Gene:

Gene:
AGO4
Ensembl Gene ID:
ENSAPLG00000010882
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011325
5269138 - 5280979
11842