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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_5274940_5275114_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5274940 - 5275114
Intron Length:
175

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAGGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGGTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTATTTAGGT
Flanking Amino Acid:
QRVKFTKEIRGLKVEVTHCG
Intron Amino Acid Position:
254

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
72.9
36.4
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
87.2
0.84
0.8
84.6
36
Minor 5ss
31.2
-2.1
3.7
47.6
48
Minor BPS
55.5
0.25
2
80.67
41.3

Associated Gene:

Gene:
AGO4
Ensembl Gene ID:
ENSAPLG00000010882
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011325
5269138 - 5280979
11842