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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_5276049_5277121_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5276049 - 5277121
Intron Length:
1073

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTGCT
5'SS Class:
major
3'SS Sequence:
TTTTACATGTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTTTGCTTAATT
Flanking Amino Acid:
AHPLPIGRDRVDMEVTLPGE
Intron Amino Acid Position:
103

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
72.5
37.3
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
64
0.32
1.2
69.4
40.5
Minor 5ss
36.6
-1.5
3.3
47.2
42.3
Minor BPS
80.1
1.02
1.6
95.75
31

Associated Gene:

Gene:
AGO4
Ensembl Gene ID:
ENSAPLG00000010882
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011325
5269138 - 5280979
11842