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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_5277243_5277979_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5277243 - 5277979
Intron Length:
737

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGAGTT
5'SS Class:
strong_major
3'SS Sequence:
CCTTCCTCTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTGAT
U12 Branch Point Sequence:
TTCTCCATAACT
Flanking Amino Acid:
KPEKRPRRVNREVVDTMVRH
Intron Amino Acid Position:
62

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.9
80.7
31.7
Major BPS
75
0.62
1
65.3
41.5
Major PPT
78.4
0.64
0.7
73.3
24.9
Minor 5ss
42.5
-0.8
3.5
64.3
47.2
Minor BPS
78.3
0.97
1.5
93.14
35.1

Associated Gene:

Gene:
AGO4
Ensembl Gene ID:
ENSAPLG00000010882
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011325
5269138 - 5280979
11842