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Intron Name: Anas_platyrhynchos_platyrhynchos_24_5288267_5288836_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5288267 - 5288836

Intron Length:

570

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAAACAT

5'SS Class:

strong_major

3'SS Sequence:

GTTTCTGTGGTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTAAAA

U12 Branch Point Sequence:

TTTTCTTCCACT

Flanking Amino Acid:

LHSETQRLIRESSVSLPYHV

Intron Amino Acid Position:

307

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.7

0.75

0.9

36.4

Major BPS

73.1

0.58

79.6

29.1

Major PPT

68.6

0.42

65.7

40.9

Minor 5ss

-1.9

3.3

47.4

Minor BPS

64.5

0.54

87.98

37.6

Associated Gene:

Gene:

CLSPN

Ensembl Gene ID:

ENSAPLG00000011178

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011626

5284962 - 5299957

14996

ENSAPLT00000010561

5284962 - 5299957

14996