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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_5292888_5293308_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5292888 - 5293308
Intron Length:
421

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAAGTAG
5'SS Class:
major
3'SS Sequence:
TTCTTTTCAGAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAA
U12 Branch Point Sequence:
TTATATTTAACT
Flanking Amino Acid:
EAADKGSTKLDDDSFSLPTP
Intron Amino Acid Position:
740

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
69
38.3
Major BPS
79.5
0.73
0.9
70
36.9
Major PPT
72.3
0.5
1
76.4
31.1
Minor 5ss
35.4
-1.7
3.3
45.9
49.3
Minor BPS
77
0.92
1.4
90
33.5

Associated Gene:

Gene:
CLSPN
Ensembl Gene ID:
ENSAPLG00000011178
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010561
5284962 - 5299957
14996