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Intron Name: Anas_platyrhynchos_platyrhynchos_24_5297558_5298258_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5297558 - 5298258

Intron Length:

701

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGGCTTG

5'SS Class:

strong_major

3'SS Sequence:

TTGTCTCTGCTAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTCTTAT

U12 Branch Point Sequence:

AATCTCTTATTT

Flanking Amino Acid:

KVTAKSLQKKASPATVVQDT

Intron Amino Acid Position:

1204

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.1

0.71

69.7

43.7

Major BPS

79.1

0.72

69.3

38.4

Major PPT

71.4

0.48

66.3

40.7

Minor 5ss

46.1

-0.4

3.2

63.6

48.1

Minor BPS

58.7

0.35

1.6

72.76

38.1

Associated Gene:

Gene:

CLSPN

Ensembl Gene ID:

ENSAPLG00000011178

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010561

5284962 - 5299957

14996

ENSAPLT00000011626

5284962 - 5299957

14996