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Intron Name: Anas_platyrhynchos_platyrhynchos_24_5298342_5298559_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5298342 - 5298559

Intron Length:

218

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAATGGTT

5'SS Class:

strong_major

3'SS Sequence:

CTTTGTTCTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

AGTGTTTTAATA

Flanking Amino Acid:

ETFRPASDIQIKNGSLLNRP

Intron Amino Acid Position:

1232

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.8

0.75

78.8

35.1

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

86.9

0.83

0.7

84.7

30.2

Minor 5ss

35.2

-1.7

3.8

55.5

48.6

Minor BPS

61.3

0.35

1.3

65.41

35.5

Associated Gene:

Gene:

CLSPN

Ensembl Gene ID:

ENSAPLG00000011178

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011626

5284962 - 5299957

14996

ENSAPLT00000010561

5284962 - 5299957

14996