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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_533266_551873_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
533266 - 551873
Intron Length:
18608

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATTCT
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAA
U12 Branch Point Sequence:
CTATATTTAACT
Flanking Amino Acid:
ASSYRELPIIRAGKPPPGLH
Intron Amino Acid Position:
23

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
83.8
28
Major BPS
79.5
0.73
0.9
70
36.9
Major PPT
88.1
0.86
0.8
80.3
37.3
Minor 5ss
42.2
-0.9
2.9
59.5
45
Minor BPS
70
0.71
1.5
81.67
39.8

Associated Gene:

Gene:
PPP1R8
Ensembl Gene ID:
ENSAPLG00000001009
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040771
525291 - 552803
27513