Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_5356135_5357044_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5356135 - 5357044

Intron Length:

910

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGTTGC

5'SS Class:

strong_major

3'SS Sequence:

GTCTTTTGAACAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATCTCAT

U12 Branch Point Sequence:

GTCTTTTGAACA

Flanking Amino Acid:

VELLKKCLEELKKRFILNLT

Intron Amino Acid Position:

148

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.7

0.96

0.8

78.3

32.5

Major BPS

86.1

0.9

0.7

85.7

22.9

Major PPT

72.1

0.5

68.9

40.8

Minor 5ss

35.1

-1.7

2.8

43.9

Minor BPS

61.8

0.37

1.4

68.24

38.3

Associated Gene:

Gene:

PSMB2

Ensembl Gene ID:

ENSAPLG00000010006

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023093

5346109 - 5357204

11096

ENSAPLT00000010439

5347012 - 5357152

10141