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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_5370200_5370563_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5370200 - 5370563
Intron Length:
364

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTACT
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTTAT
U12 Branch Point Sequence:
TTTATAGTAACG
Flanking Amino Acid:
HTRKNMLLATKQICKEFADL
Intron Amino Acid Position:
340

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
83.3
27.9
Major BPS
76.3
0.65
1
67.3
39.3
Major PPT
89.5
0.89
0.6
84.5
23.2
Minor 5ss
34.6
-1.7
2.8
44.2
37
Minor BPS
48.1
-0.2
2.3
64.87
42.8

Associated Gene:

Gene:
TFAP2E
Ensembl Gene ID:
ENSAPLG00000010002
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020044
5369911 - 5390859
20949
ENSAPLT00000010409
5369911 - 5392175
22265
ENSAPLT00000021163
5369911 - 5390828
20918