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Intron Name: Anas_platyrhynchos_platyrhynchos_24_5370706_5373485_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5370706 - 5373485

Intron Length:

2780

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGAGCC

5'SS Class:

strong_major

3'SS Sequence:

GTCCTGCTTGTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGTCAA

U12 Branch Point Sequence:

AGCTTGTCAATC

Flanking Amino Acid:

NVTLLTSLVEGEAVHLARDF

Intron Amino Acid Position:

293

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.1

0.95

0.8

31.7

Major BPS

75.6

0.64

1.1

77.7

37.1

Major PPT

71.7

0.49

0.9

65.4

36.2

Minor 5ss

31.7

-2.1

3.3

42.5

44.5

Minor BPS

44.7

-0.4

2.1

52.92

39.1

Associated Gene:

Gene:

TFAP2E

Ensembl Gene ID:

ENSAPLG00000010002

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021163

5369911 - 5390828

20918

ENSAPLT00000020044

5369911 - 5390859

20949

ENSAPLT00000010409

5369911 - 5392175

22265