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Intron Name: Anas_platyrhynchos_platyrhynchos_24_5373605_5373843_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5373605 - 5373843

Intron Length:

239

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGGGGC

5'SS Class:

strong_major

3'SS Sequence:

CCTTTCTCTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTACAT

U12 Branch Point Sequence:

TTAATTACATCC

Flanking Amino Acid:

NASLLGGVLRRAKSKNGGRC

Intron Amino Acid Position:

253

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.9

73.9

36.8

Major BPS

73.9

0.59

30.2

Major PPT

86.7

0.82

0.7

84.5

23.4

Minor 5ss

29.6

-2.3

3.5

41.1

45.6

Minor BPS

41.1

-0.6

1.9

52.83

38.4

Associated Gene:

Gene:

TFAP2E

Ensembl Gene ID:

ENSAPLG00000010002

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020044

5369911 - 5390859

20949

ENSAPLT00000010409

5369911 - 5392175

22265

ENSAPLT00000021163

5369911 - 5390828

20918