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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_5389926_5390253_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5389926 - 5390253
Intron Length:
328

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCGGGG
5'SS Class:
major
3'SS Sequence:
TTGGTGCTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCTGAC
U12 Branch Point Sequence:
CCCCGGCTGACG
Flanking Amino Acid:
LGHHGLEDIQAVDDGGMNLL
Intron Amino Acid Position:
160

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.7
0.32
1.3
49.8
46.9
Major BPS
49.4
-0
1.3
42.8
41.8
Major PPT
77.4
0.62
1
73.5
41.8
Minor 5ss
33.1
-1.9
3.7
46.9
48.5
Minor BPS
33
-1.4
2.3
31.99
41.3

Associated Gene:

Gene:
TFAP2E
Ensembl Gene ID:
ENSAPLG00000010002
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020044
5369911 - 5390859
20949
ENSAPLT00000010409
5369911 - 5392175
22265