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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_5390703_5392073_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5390703 - 5392073
Intron Length:
1371

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGGACG
5'SS Class:
major
3'SS Sequence:
TCCGCCGCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
CCGTCCTCACCG
Flanking Amino Acid:
METPARHRHGPRRGAPRGT
Intron Amino Acid Position:
10

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
63.4
42.4
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
64.3
0.32
0.9
57.2
33.3
Minor 5ss
27.6
-2.6
3
32.9
41.7
Minor BPS
47.9
-0.3
2
50.86
49.1

Associated Gene:

Gene:
TFAP2E
Ensembl Gene ID:
ENSAPLG00000010002
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010409
5369911 - 5392175
22265