About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_5396470_5396633_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5396470 - 5396633
Intron Length:
164

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGCTCT
5'SS Class:
major
3'SS Sequence:
TGCTGCTTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
GGATTTTGAACT
Flanking Amino Acid:
PAYASAWGDIGRAGGAGQSQ
Intron Amino Acid Position:
623

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.64
1
68.8
38.6
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
78.4
0.64
0.9
69
41.9
Minor 5ss
41.5
-0.9
3
57.8
46.4
Minor BPS
59.5
0.38
1.4
71.12
39.4

Associated Gene:

Gene:
NCDN
Ensembl Gene ID:
ENSAPLG00000009984
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010391
5395216 - 5400403
5188