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Intron Name: Anas_platyrhynchos_platyrhynchos_24_5397249_5397462_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5397249 - 5397462

Intron Length:

214

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAACAGAG

5'SS Class:

major

3'SS Sequence:

CCTTTCTCTCTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTCAGAT

U12 Branch Point Sequence:

AGATCAGGAAGT

Flanking Amino Acid:

NLVVTAPDLIRQEKTFCSLM

Intron Amino Acid Position:

526

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.3

0.62

1.2

40.1

Major BPS

61.8

0.29

1.1

58.3

39.2

Major PPT

80.7

0.69

0.7

73.4

31.6

Minor 5ss

35.3

-1.7

3.4

46.6

48.7

Minor BPS

39.9

-0.6

2.4

58.49

43.7

Associated Gene:

Gene:

NCDN

Ensembl Gene ID:

ENSAPLG00000009984

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018723

5395344 - 5400403

5060

ENSAPLT00000010391

5395216 - 5400403

5188