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Intron Name: Anas_platyrhynchos_platyrhynchos_24_5397688_5398192_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5397688 - 5398192

Intron Length:

505

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGTGTATT

5'SS Class:

strong_major

3'SS Sequence:

TTTTCCCTTCTAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

ACCTTTTTATTT

Flanking Amino Acid:

EGSVLPQDALRFLLPGFCHL

Intron Amino Acid Position:

451

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.6

0.89

0.8

88.7

25.2

Major BPS

96.5

1.15

0.6

34.2

Major PPT

85.4

0.8

0.7

78.2

30.6

Minor 5ss

42.3

-0.8

2.8

59.2

45.4

Minor BPS

52.9

0.17

1.5

64.63

41.3

Associated Gene:

Gene:

NCDN

Ensembl Gene ID:

ENSAPLG00000009984

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018723

5395344 - 5400403

5060

ENSAPLT00000010391

5395216 - 5400403

5188