Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_5398432_5398937_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5398432 - 5398937

Intron Length:

506

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGGCAG

5'SS Class:

strong_major

3'SS Sequence:

CTTCTTCACACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATGTAAT

U12 Branch Point Sequence:

TGCTTCTTCACA

Flanking Amino Acid:

FGAIIYYLRQVTEEELQDPF

Intron Amino Acid Position:

372

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.3

0.88

0.9

69.6

42.7

Major BPS

75.6

0.64

1.1

75.7

36.5

Major PPT

77.3

0.61

0.8

72.5

31.2

Minor 5ss

30.1

-2.3

3.2

37.6

47.1

Minor BPS

62.6

0.39

1.8

71.26

41.2

Associated Gene:

Gene:

NCDN

Ensembl Gene ID:

ENSAPLG00000009984

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018723

5395344 - 5400403

5060

ENSAPLT00000010391

5395216 - 5400403

5188