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Intron Name: Anas_platyrhynchos_platyrhynchos_24_5399925_5400231_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5399925 - 5400231

Intron Length:

307

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAAGAATC

5'SS Class:

strong_major

3'SS Sequence:

GTTTGCCTTACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTGTTAT

U12 Branch Point Sequence:

TTTGCCTTACAG

Flanking Amino Acid:

DSEQFAALLLVTKAVKAGEV

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.7

0.84

0.9

80.7

31.6

Major BPS

81.3

0.78

1.1

71.7

44.6

Major PPT

80.6

0.69

0.9

37.5

Minor 5ss

38.2

-1.3

3.1

49.9

40.6

Minor BPS

58.4

0.12

1.9

68.4

44.9

Associated Gene:

Gene:

NCDN

Ensembl Gene ID:

ENSAPLG00000009984

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018723

5395344 - 5400403

5060

ENSAPLT00000010391

5395216 - 5400403

5188