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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_5402335_5407145_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5402335 - 5407145
Intron Length:
4811

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGATTCTT
5'SS Class:
strong_major
3'SS Sequence:
TTCCCTTTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAA
U12 Branch Point Sequence:
TGTTTTTTGTCT
Flanking Amino Acid:
ACLCALCSSTDANWTRSKCE
Intron Amino Acid Position:
48

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
79.8
35.1
Major BPS
74.8
0.62
1
67
39.8
Major PPT
82.9
0.74
0.7
75.9
32.5
Minor 5ss
34.8
-1.7
3.1
50.1
46.1
Minor BPS
46.4
-0.2
3.4
78.8
37.8

Associated Gene:

Gene:
KIAA0319L
Ensembl Gene ID:
ENSAPLG00000009379
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009916
5402168 - 5433221
31054