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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_5407841_5412777_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5407841 - 5412777
Intron Length:
4937

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGGGG
5'SS Class:
strong_major
3'SS Sequence:
CTCTTCTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAC
U12 Branch Point Sequence:
ATCAAACTAACA
Flanking Amino Acid:
SDADSVGLPQTYTGTPAPEL
Intron Amino Acid Position:
280

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
67.8
43.5
Major BPS
68
0.45
0.9
67.6
25.3
Major PPT
87.6
0.85
0.7
80.1
32
Minor 5ss
28.6
-2.5
3.5
37.8
47.1
Minor BPS
44.4
-0.4
2
58.03
40.5

Associated Gene:

Gene:
KIAA0319L
Ensembl Gene ID:
ENSAPLG00000009379
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009916
5402168 - 5433221
31054