Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_5416222_5417390_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5416222 - 5417390

Intron Length:

1169

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAAGCTT

5'SS Class:

strong_major

3'SS Sequence:

GTTTACTTTTCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGTTTAC

U12 Branch Point Sequence:

TTGTGTTTACTT

Flanking Amino Acid:

KHSQTLKLSKLTVGLYEFKV

Intron Amino Acid Position:

444

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.5

0.74

75.8

39.8

Major BPS

71.4

0.53

1.1

63.4

Major PPT

84.6

0.78

0.8

81.3

Minor 5ss

-1.6

3.6

55.8

48.4

Minor BPS

53.3

0.18

74.76

43.2

Associated Gene:

Gene:

KIAA0319L

Ensembl Gene ID:

ENSAPLG00000009379

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009916

5402168 - 5433221

31054