About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_5419575_5419812_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5419575 - 5419812
Intron Length:
238

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTTAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTCTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
GTTTTCACAATT
Flanking Amino Acid:
TNLVPGNYTFSLTVVDSDGA
Intron Amino Acid Position:
548

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.9
84
30.2
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
94.2
0.99
0.5
93.1
16
Minor 5ss
40.5
-1.1
3.2
57.3
47.4
Minor BPS
56.1
0.27
1.8
77.82
38.5

Associated Gene:

Gene:
KIAA0319L
Ensembl Gene ID:
ENSAPLG00000009379
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009916
5402168 - 5433221
31054