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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_5421210_5422072_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5421210 - 5422072
Intron Length:
863

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGTGTATC
5'SS Class:
major
3'SS Sequence:
GTACTTTGTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTCAT
U12 Branch Point Sequence:
AAAGTTTAAACT
Flanking Amino Acid:
KIVSFLWEKTRGPDGVKLEN
Intron Amino Acid Position:
710

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1
74.3
35.9
Major BPS
78.3
0.7
0.8
77.7
26.1
Major PPT
70.8
0.47
1
69.6
41.4
Minor 5ss
41.4
-1
2.7
54.6
42.8
Minor BPS
49
0.01
1.7
63.43
41.1

Associated Gene:

Gene:
KIAA0319L
Ensembl Gene ID:
ENSAPLG00000009379
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009916
5402168 - 5433221
31054