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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_5422985_5423377_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5422985 - 5423377
Intron Length:
393

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TATTTCTCACTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATCTTTAGAACT
Flanking Amino Acid:
VERTTVEVKPDPRKNNLVEI
Intron Amino Acid Position:
857

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
68.8
43.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
73.8
0.54
0.9
68.1
38.4
Minor 5ss
31.9
-2.1
2.9
33
41.8
Minor BPS
51
0.11
1.7
71.58
39.4

Associated Gene:

Gene:
KIAA0319L
Ensembl Gene ID:
ENSAPLG00000009379
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009916
5402168 - 5433221
31054