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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_5426655_5427233_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5426655 - 5427233
Intron Length:
579

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTATGTGAA
5'SS Class:
strong_major
3'SS Sequence:
GTTTTGCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TCGTCTTTATCT
Flanking Amino Acid:
VQMGDGESNCEWSVLYVIIA
Intron Amino Acid Position:
999

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
0.9
72
32.7
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
84.5
0.78
0.8
81.2
36.5
Minor 5ss
38.2
-1.3
3.1
45.3
45.2
Minor BPS
67.2
0.62
1.6
79.17
43.6

Associated Gene:

Gene:
KIAA0319L
Ensembl Gene ID:
ENSAPLG00000009379
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009916
5402168 - 5433221
31054