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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_5427325_5427681_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5427325 - 5427681
Intron Length:
357

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGACTG
5'SS Class:
major
3'SS Sequence:
TTTTTCTTCTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TGCCTCTTAATT
Flanking Amino Acid:
LSWMVICCCKRRKGKSKRKS
Intron Amino Acid Position:
1029

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
62.5
43.9
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
88.6
0.87
0.6
89
20.1
Minor 5ss
28.7
-2.4
3.4
37.9
47
Minor BPS
69.8
0.7
1.2
77.64
39

Associated Gene:

Gene:
KIAA0319L
Ensembl Gene ID:
ENSAPLG00000009379
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009916
5402168 - 5433221
31054