Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_5448228_5448996_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5448228 - 5448996

Intron Length:

769

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAATGAA

5'SS Class:

strong_major

3'SS Sequence:

TTTGTGTGTCCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCTTCAC

U12 Branch Point Sequence:

CTTCACTGAACT

Flanking Amino Acid:

PPFQKQEVESDKLSVGKRKR

Intron Amino Acid Position:

1372

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.9

0.87

0.9

27.6

Major BPS

77.5

0.68

79.6

Major PPT

77.1

0.61

69.2

46.1

Minor 5ss

31.4

-2.1

3.2

39.9

46.1

Minor BPS

61.8

0.45

1.7

79.84

41.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000002899

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003014

5446759 - 5475491

28733