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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_5455446_5455561_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5455446 - 5455561
Intron Length:
116

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGTTGG
5'SS Class:
major
3'SS Sequence:
CTCTCATTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
TTTATCTGATCA
Flanking Amino Acid:
LFLDPKIFEKDQGSTYSGDL
Intron Amino Acid Position:
1020

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1.3
69.7
43.7
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
82.3
0.73
0.8
75.9
31.5
Minor 5ss
35
-1.7
2.7
41.5
44.9
Minor BPS
56.7
0.21
1.8
72.82
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002899
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003014
5446759 - 5475491
28733