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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_5455616_5456623_R

Intron Information:

Intron Rank:
20
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
5455616 - 5456623
Intron Length:
1008

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGGTATGT
5'SS Class:
weak_major
3'SS Sequence:
TCTTTTTCTAAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACATAT
U12 Branch Point Sequence:
CTTTTTCTAAAG
Flanking Amino Acid:
DEEKEKTHSHGSQTSEHELF
Intron Amino Acid Position:
1002

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.2
0.22
1.1
54
39.6
Major BPS
66.4
0.41
1
61.3
37
Major PPT
80.5
0.69
0.9
82.3
27
Minor 5ss
33
-1.9
3.4
44.4
45.3
Minor BPS
50
-0.1
1.8
60.47
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002899
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003014
5446759 - 5475491
28733