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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_5456867_5458709_R

Intron Information:

Intron Rank:
18
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
5456867 - 5458709
Intron Length:
1843

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTATT
5'SS Class:
strong_major
3'SS Sequence:
AAGATTAAATGAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATATAT
U12 Branch Point Sequence:
TAGTCCTAAAAT
Flanking Amino Acid:
PHTQNKECQTEELPLVFVVS
Intron Amino Acid Position:
939

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.9
0.99
0.8
92.6
23.2
Major BPS
71.4
0.53
1
67.3
39.3
Major PPT
42.6
-0.4
1.7
42.4
45.7
Minor 5ss
47.8
-0.2
2.5
68.3
42.6
Minor BPS
63.4
0.5
1.8
78.54
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002899
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003014
5446759 - 5475491
28733