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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_54593_60566_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
54593 - 60566
Intron Length:
5974

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TACTTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
ATGTTCAGAAGT
Flanking Amino Acid:
MLPNEDSIKEIAKVDCKEVL
Intron Amino Acid Position:
263

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
1.1
84.4
27.7
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
89.5
0.89
0.7
88.2
28.7
Minor 5ss
31.4
-2.1
2.4
34
41.4
Minor BPS
47.1
-0.1
2
67.79
42.9

Associated Gene:

Gene:
RLF
Ensembl Gene ID:
ENSAPLG00000011786
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012274
23045 - 74585
51541