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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_5463148_5463273_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5463148 - 5463273
Intron Length:
126

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGACAT
5'SS Class:
major
3'SS Sequence:
TGCTTTCCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTAAA
U12 Branch Point Sequence:
TGTAAAATAAGG
Flanking Amino Acid:
CSYSCVVAFQNLFNKPAGMN
Intron Amino Acid Position:
597

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
0.9
69.4
36.6
Major BPS
62.9
0.32
1.2
65.3
38.6
Major PPT
82.7
0.74
0.8
77.3
31.5
Minor 5ss
34.3
-1.8
3.1
46.9
48.4
Minor BPS
39.7
-0.9
2.2
48.65
43.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002899
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003014
5446759 - 5475491
28733